paper in Frontiers
Differentiated memory and scientific cognition in AI research agents
Cuadros DF, Maiga A-A, Thatham S, Ortiz A, Powers-Fletcher M and Tang M (2026) Differentiated memory and scientific cognition in AI research agents. Front. Big Data 9:1916523. doi: 10.3389/fdata.2026.1916523
AI research agents increasingly support ideation, literature search, coding, experimental execution, analysis, and manuscript drafting across the scientific workflow. This progress advances automated discovery, but workflow automation is not scientific cognition. Scientific reasoning is cumulative and path-dependent: it depends on what a researcher has written, read, learned from critique, absorbed through experience, and used as habitual standards for judging novelty, rigor, feasibility, and significance. We propose Mnemo as a framework for modeling scientific cognition in AI research agents. First, scientific cognition may require differentiated memory, organized into distinct spaces for authored work, external reference, critique, experience, and judgment. Second, provenance should be treated not as passive metadata but as memory routing, because source origin helps determine cognitive function in reasoning. Third, new ideas may be better modeled as controlled collisions across memory spaces, filtered by judgment, rejection, and epistemic calibration, than as generic recombination from model priors. Mnemo motivates a research agenda for AI in science centered on routing fidelity, critique use, judgment alignment, rejection quality, and epistemic calibration.




I am very excited to share that UC grant proposal, “AI-Enabled Prediction of Coupled Hydrologic and Biogeochemical Processes in Heterogeneous Subsurface Systems,” has been selected for the U.S. Department of Energy’s initiative to accelerate scientific breakthroughs through artificial intelligence. 



2026. Housing Studio. 


This project proposes the development of an AI-augmented Digital Twin installation for the Fort Ancient Earthworks, a UNESCO World Heritage site in southern Ohio. Using reality capture, spatial computing, and Large Language Models (LLMs), the project will create an interactive web- and mobile-based experience that allows users to explore the site through immersive visualization and natural language conversation.
